Biomedical Engineering

3D imaging of intracellular tau fibrils and jellyfish neuroscience models via computational chemical and fluorescence microscopy
J Zhao, JX Cheng, L Tian, B Wolozin, B Weissbourd
SPIE- Neural Imaging and Sensing 2025, PC1330304, 2025

Blood pressure waveform morphology assessed using a transmission line model and harmonic distortion analysis.  
N Milkovich, GF Mitchell, B Suki, Y Zhang
Scientific Reports 15 (1), 9076, 2025

Broadband frequency domain near infrared spectroscopy for fluid volume status monitoring during hemodialysis (Conference Presentation)
D Suciu, T Pham, LL Wei, V Chitalia, D Roblyer
SPIE-Optical Tomography and Spectroscopy of Tissue XVI 13314, 133140C, 2025

Characterization of the dispersion uniformity and nonlinear pulse propagation of photonic crystal fibers
T Lim, RR Gattass, DL Rhonehouse, GD Chin, L Busse, LB Shaw, ... MY Sander
Optics Express 33 (5), 12090-12100, 2025

Characterizing the effects of deep brain stimulation on STN regulation of gait in murine Parkinson’s Disease model
L Steiner, H Tseng, I Van Welie, R Darie, A Lindsay, S Zhou, X Han
Brain Stimulation 18, Issue 1, 486, 2025

Cuffless blood pressure measurements using speckle contrast optical spectroscopy: progress towards a long-standing goal of biomedicine (Conference Presentation)
D Roblyer
SPIE- Optical Biopsy XXIII: Toward Real-Time Spectroscopic Imaging and Diagnosis …, 2025

A data-driven framework for developing a unified density–modulus relationship for the human lumbar vertebral body
S Luan, EF Morgan
Journal of the Mechanical Behavior of Biomedical Materials 163, 106888, 2025

Digital solutions for migrant and refugee health: a framework for analysis and action
SA Matlin, J Hanefeld, A Corte-Real, PR da Cunha, T De Gruchy, ... MH Zaman
The Lancet Regional Health–Europe 50, 2025

Do Children's Brains Function Differently During Book Reading and Screen Time? A fNIRS Study
M Pecukonis, M Yücel, H Lee, C Knox, DA Boas, H Tager‐Flusberg
Developmental Science 28 (2), e13615, 2025

E-FTMap: A Protein Structure Based Pharmacophore Identification Server for Guiding Fragment Expansion
O Khan, G Jones, D Kozakov, D Beglov, D Joseph-McCarthy, S Vajda
Journal of Molecular Biology, 168956, 2025

Effects of microplastic concentration, composition, and size on Escherichia coli biofilm-associated antimicrobial resistance
N Gross, J Muhvich, C Ching, B Gomez, E Horvath, Y Nahum, MH Zaman
Applied and Environmental Microbiology, e02282-24, 2025

Effects of skin tone and adipose thickness on frequency domain near-infrared spectroscopy and diffuse correlation spectroscopy
CA Gómez, D Roblyer
SPIE- Biophotonics Discovery 2 (1), 012503-012503, 2025

Elastic and anti-elastic random walk: Applications to soft matter phenomena
JHM Pontes, JS de Sousa, B Suki, JS Andrade, CLN Oliveira
Physics of Fluids 37 (2), 2025

Elastic scattering spectroscopy for intraoperative oral cancer mucosal margin guidance: Initial results from a 104 patient cohort
GP Krisciunas, E Rodriguez-Diaz, L Berry, G Spokas, OM A'Amar, ...  I Bigio
American Journal of Otolaryngology, 104605, Volume 46, Issue 3, 2025

Endolysosome-targeted nanoparticle delivery of antiviral therapy for coronavirus infections
A Petcherski, BM Tingley, A Martin, S Adams, AJ Brownstein, ... MW Grinstaff
Life Science Alliance 8 (4), 2025

Enhanced multiscale human brain imaging by semi-supervised digital staining and serial sectioning optical coherence tomography
S Cheng, S Chang, Y Li, A Novoseltseva, S Lin, Y Wu, J Zhu, AC McKee, ...  IJ Bigio, DA Boas, L Tian 
Light: Science & Applications 14 (1), 57, 2025

Environmental concentrations of copper and iron can alter the evolution of antimicrobial resistance of E. coli against ciprofloxacin and doxycycline
I Sutradhar, P Kalyan, K Chukwu, ALK Abia, J Mbanga, S Essack, ... MH Zaman
Frontiers in Microbiology 16, 1539807, 2025

Fluorescein-based SynNotch adaptors for regulating gene expression responses to diverse extracellular and matrix-based cues
JC Tran, CJ Kuffner, AM Marzilli, RE Miller, ZE Silfen, JB McMahan, ...  JT Ngo
Nature Communications 16 (1), 852,2025

Frequency-domain broadband shortwave infrared spectroscopy for noninvasive monitoring of tissue optical properties (Conference Presentation)
T Pham, D Suciu, LL Wei, S Guruprasad, D Roblyer
SPIE- Optical Tomography and Spectroscopy of Tissue XVI 13314, 133140A, 2025

Genome duplication in a long-term multicellularity evolution experiment
K Tong, S Datta, V Cheng, DJ Haas, S Gourisetti, HL Yopp, TC Day, AS Khalil,  PL Conlin, GO Bozdag, WC Ratcliff
Nature, 1-9, 2025

Highly sensitive molecular assay based on Identical Multi-Repeat Sequence (IMRS) algorithm for the detection of Trichomonas vaginalis infection
C Shiluli, S Kamath, BN Kanoi, R Kimani, B Oduor, H M. Abkallo, M Maina, ...  CM Klapperich
PloS one 20 (2), e0317958, 2025

Human neural dynamics of real-world and imagined navigation
Seeber, Martin ; Stangl, Matthias ; Vallejo Martelo, Mauricio ; Topalovic, Uros ; Hiller, Sonja ; Halpern, Casey H ; Langevin, Jean-Philippe ; Rao, Vikram R ; Fried, Itzhak ; Eliashiv, Dawn ; Suthana, Nanthia
Nature human behaviour, 2025

Identifying and Overcoming Barriers to Classroom Engagement in Biomedical Engineering Education
SI Rooney, CE King, L Christian, M Kavdia, JC Kays, SF Shady
Biomedical Engineering Education, 1-14, 2025

Impact of uniform illumination in widefield microscopy and mesoscopy: An efficient flat-field imaging solution
MS Ünlü, M Aslan, A Gray, L Packard, C Giogretta, I Bigio
Optica Open 2025

Kilohertz electrical stimulation evokes robust cellular responses like conventional frequencies but distinct population dynamics
CR Ravasio, K Kondabolu, S Zhou, E Lowet, E San Antonio, RA Mount, ... X Han
Communications Biology 8 (1), 2025

Label-free mid-infrared photothermal microscopy for imaging of neural cells
P Samolis, B Durgun, E Wei, E Kuang, C Lazzarini, T Posati, ... MY Sander
SPIE- Advanced Chemical Microscopy for Life Science and Translational Medicine …, 2025

Label-free nanoscopy of cell metabolism by ultrasensitive reweighted visible stimulated Raman scattering
Haonan Lin, Scott Seitz, Yuying Tan, Jean-Baptiste Lugagne, Le Wang, Guangrui Ding, Hongjian He, Tyler J Rauwolf, Mary J Dunlop, John H Connor, JA Porco Jr, Lei Tian, JX Cheng
Nature Methods, 1-11, 2025

Ligand interaction landscape of transcription factors and essential enzymes in E. coli
H Peng, S Kotelnikov, ME Egbert, S Ofaim, GC Stevens, S Phanse, ...  S Vajda
Cell, 2025

Misfolding PRSS1 variant p. Ala61Val in a case of suspected intrauterine pancreatitisM Sándor, DS Vitale, ZA Nagy, SY Ibrahim, M Abu-El-Haija, M Lazou, ... S Vajda
Pancreatology 25 (1), 70-81, 2025

NIRS-BIDS: Brain Imaging Data Structure Extended to Near-Infrared Spectroscopy
R Luke, R Oostenveld, H Cockx, G Niso, MJ Shader, F Orihuela-Espina, ... DA Boas,
Scientific Data 12 (1), 159, 2025

Non-invasive screening for laryngeal cancer using the oral cavity as a proxy for differentiation of laryngeal cancer versus leukoplakia: A novel application of ESS technology and artificial intelligence supported statistical modeling
M Sakharkar, G Spokas, L Berry, K Daniels, P Nithagon, ...  I Bigio
American Journal of Otolaryngology 46 (1), 104581, 2025

Obesity-Associated Conditions Hinder Solute Drainage Function of Engineered Human Lymphatic Vessels
AJ Seibel, CL Frosti, AR Tlemçani, N Lahiri, JA Brammer-DePuy, ... J Tien
Cellular and Molecular Bioengineering, 1-17, 2025

Optical coherence tomography enables longitudinal evaluation of cell graft-directed remodeling in stroke lesions
HO Adewumi, MG Simkulet, G Küreli, JT Giblin, AB Lopez, ŞE Erdener, ... DA Boas, TM O’Shea
Experimental neurology 385, 115117, 2025

Physiologic Doses of Transforming Growth Factor-β Improve the Composition of Engineered Articular Cartilage
T Wang, S Dogru, Z Dai, SY Kim, NA Vickers, MB Albro
Tissue Engineering Part A 31 (1-2), 56-68, 2025

Plane wave compounding with adaptive joint coherence factor weighting
N Khetan, J Mertz
Ultrasonics, 107573, 2025

Precision-Cut Lung Slices: Emerging Tools for Preclinical and Translational Lung Research: An Official American Thoracic Society Workshop Report
M Lehmann, R Krishnan, J Sucre, HS Kulkarni, RH Pineda, C Anderson, ... Bela Suki
American Journal of Respiratory Cell and Molecular Biology 72 (1), 16-31, 2025

Probing the physical hallmarks of cancer
HT Nia, LL Munn, RK Jain
Nature Methods, 1-19, 2025

Proliferation history and transcription factor levels drive direct conversion to motor neurons
NB Wang, BA Lende-Dorn, AM Beitz, P Han, HO Adewumi, TM O’Shea, ...
Cell Systems, 2025

Radioprotection of healthy tissue via nanoparticle-delivered mRNA encoding for a damage-suppressor protein found in tardigrades
AR Kirtane, J Bi, NU Rajesh, C Tang, M Jimenez, E Witt, MK McGovern, ...
Nature biomedical engineering, 1-14, 2025

Raman Spectroscopic Probe Provides Optical Biomarkers of Cartilage Composition Predictive of Tissue Function
M Kazemi, C Yu, DR Mehrotra, EE Ersland, S Zbyn, F Korna, SJ Staffa, ...  MW Grinstaff,  MB Albro
Osteoarthritis and Cartilage, 2025

Reflection-mode diffraction tomography of multiple-scattering samples on a reflective substrate from intensity images
T Li, J Zhu, Y Shen, L Tian
Optica 12 (3), 406-417, 2025

Risk of Bony Endplate Failure During Vertebral Fracture
NR Frings, EF Morgan
Journal of the Mechanical Behavior of Biomedical Materials, 106939, 2025

TapeTech microfluidic connectors: adhesive tape-enabled solution for organ-on-a-chip system integration
T Ching, ACI van Steen, D Gray-Scherr, JL Teo, A Vasan, J Jeon, J Shah, ... CS Chen
Lab on a Chip, 2025

Targeting the Epigenome Reduces Keloid Fibroblast Cell Proliferation, Migration, and Invasion
N Almier, K Leibowitz, AC Gower, S To, MR Keller, BK Connizzo, DS Roh, ...
Journal of Investigative Dermatology 145 (2), 411-422. e7, 2025

Separating cognitive and motor processes in the behaving mouse
Munib A Hasnain, Jaclyn E Birnbaum, Juan Luis Ugarte Nunez, Emma K Hartman, Chandramouli Chandrasekaran, Michael N Economo
Nature Neuroscience, 1-14, 2025

A Safety and Efficacy Study of a Synthetic Biolubricant in an Equine Model of Post-Traumatic Osteoarthritis
LK Luedke, KA Seabaugh, BG Cooper, BD Snyder, MA Wimmer, ... MW Grinstaff
Animals 15 (3), 404, 2025

Skin assessment in scleroderma using spatial frequency domain imaging (SFDI)
AM Mehendale, A Ramasubramanian, A Pilvar, K Karrobi, H Vo, A Bujor, ... D Roblyer
SPIE- Photonics in Dermatology and Plastic Surgery 2025, PC132920C, 2025

Structured light imaging mesoscopy for detection of embedded morphological changes in superficial tissues
M Parsanasab, AM Mehendale, K Karrobi, D Roblyer, V Venugopalan
SPIE-Optical Tomography and Spectroscopy of Tissue XVI 13314, 87-92, 2025

Structured light imaging mesoscopy (SLIM) to assess skin involvement in scleroderma (Conference Presentation)
AM Mehendale, M Parsanasab, K Karrobi, V Venugopalan, A Bujor, ... D Roblyer
SPIE- Optical Tomography and Spectroscopy of Tissue XVI 13314, 133140I, 2025

Tm-doped ultrafast fiber laser systems with chirped pulse amplification
S Xu, T Lim, A Turnali, L Hooper, M Davey, MY Sander
SPIE- Fiber Lasers XXII: Technology and Systems 13342, 1334209, 2025

Understanding the impacts of temperature and precipitation on antimicrobial resistance in wastewater: theory, modeling, observation, and limitations
C Ching, I Sutradhar, MH Zaman
mSphere, e00947-24, 2025

Verticillin A-Loaded Surgical Buttresses Prevent Local Pancreatic Cancer Recurrence in a Murine Model
ZY Al Subeh, HC Pierre, CJ Pearce, MW Grinstaff, AH Colby, K Liu, ...
Molecular Pharmaceutics, 202