Skip to Main Content

Biomedical Engineering

PREPRINTS

Aerobic exercise reverses aging-induced depth-dependent decline in cerebral microcirculation
P Shin, Q Pian, H Ishikawa, G Hamanaka, ET Mandeville, G Shuzhen, ...
bioRxiv, 2023.02. 12.528244, 2023

Anti-CRISPR Anopheles mosquitoes inhibit gene drive spread under challenging behavioural conditions in large cages
A Simoni, R D'Amato, C Taxiarchi, M Galardini, A Trusso, R Minuz, S Grilli, ..., 2023
Research Square (Preprint)

Compressed Perturb-seq: highly efficient screens for regulatory circuits using random composite perturbations
D Yao, L Binan, J Bezney, B Simonton, J Freedman, CJ Frangieh, KK Dey, ...
bioRxiv, 2023.01. 23.525200, 2023 

Compressed phenotypic screens for complex multicellular models and high-content assays
BE Mead, C Kummerlowe, N Liu, WE Kattan, T Cheng, JH Cheah, ...
bioRxiv, 2023.01. 23.525189, 2023 

Differential effect of acute compressive injury on young and aged tendons
S Mlawer, B Connizzo
OpenBU, 2023 

ENDO-LYSOSOME-TARGETED NANOPARTICLE DELIVERY OF ANTIVIRAL THERAPY FOR CORONAVIRUS INFECTIONS
A Petcherski, B Tingley, A Martin, S Adams, A Brownstein, R Steinberg, ...
bioRxiv, 2023.05. 08.539898

Light inducible protein degradation in E. coli with LOVtag
N Tague, C Coriano-Ortiz, MB Sheets, MJ Dunlop
bioRxiv, 2023.02. 25.530042, 2023

Long-term evolution of proliferating yeast cells using the eVOLVER platform
D García-Ruano, A Jain, ZJ Heins, BG Wong, EY Wolle, AS Khalil, ... , 2023
bioRxiv, 2023.03. 28.534552

Mid-infrared Chemical Imaging of Intracellular Tau Fibrils using Fluorescence-guided Computational Photothermal Microscopy
J Zhao, L Jiang, A Matlock, Y Xu, J Zhu, H Zhu, L Tian, B Wolozin, ... 2023
arXiv:2302.11769

Senescence contributes to death resistance of aged tenocytes in a model of secondary joint damage
E Stowe, B Connizzo
OpenBU, 2023 

Stimulated Raman Photothermal Microscopy towards Ultrasensitive Chemical Imaging
Y Zhu, X Ge, H Ni, J Yin, H Lin, L Wang, Y Tan, CV Prabhu Dessai, ... 2023
bioRxiv, 2023.03. 06.531387

Trial-history biases in evidence accumulation can give rise to apparent lapses
D Gupta, B DePasquale, CD Kopec, CD Brody
bioRxiv, 2023.01. 18.524599, 2023

Article Databases

NEW PUBLICATIONS by BU BME AUTHORS

2023:

Advances in Hydrogel Adhesives for Gastrointestinal Wound Closure and Repair
X Hu, MW Grinstaff
Gels 9 (4), 282, 2023

Advances in linking single-cell bacterial stress response to population-level survival
RN Alnahhas, MJ Dunlop
Current Opinion in Biotechnology 79, 102885, 20923, 2023

Advancing pressure-sensitive adhesives for internal wound closure
DM Fitzgerald, YL Colson, MW Grinstaff
Nature Reviews Materials 8 (1), 3-5

An optogenetic toolkit for light-inducible antibiotic resistance
MB Sheets, N Tague, MJ Dunlop
Nature Communications 14 (1), 1034, 2023

The centrality of population-level factors to network computation is demonstrated by a versatile approach for training spiking networks
DePasquale, Brian ; Sussillo, David ; Abbott, L.F. ; Churchland, Mark M.
Neuron (Cambridge, Mass.), Vol.111 (5), p.631-649.e10, 2023

Computational coherent Raman scattering imaging: breaking physical barriers by fusion of advanced instrumentation and data science
H Lin, JX Cheng
eLight 3 (1), 1-19, 2023

Contrast Agent Diffusion Reflects Biomechanical Finite Element Model Properties Of Articular Cartilage
JA Tuppurainen, J Jäntti, MT Nissinen, MC Fugazzola, R van Weeren, ...
Osteoarthritis and Cartilage 31, S286, 2023

Contrast‐enhanced micro‐computed tomography of compartment and time‐dependent changes in femoral cartilage and subchondral plate in a murine model of osteoarthritis
DD Chan, M Mashiatulla, J Li, RD Ross, M Pendyala, A Patwa, ...
The Anatomical Record 306 (1), 92-109

Constraining the many-worlds interpretation of computational neuroscience with neurophotonics: a conversation with Gaute Einevoll
A Devor
Neurophotonics 10 (1), 2023

Controlled protein activities with viral proteases, antiviral peptides, and antiviral drugs
EP Tague, JB McMahan, N Tague, MJ Dunlop, JT Ngo
ACS Chemical Biology, 2023

Deep brain stimulation creates informational lesion through membrane depolarization
Lowet, Eric ; Kondabolu, Krishnakanth ; Zhou, Samuel ; Mount, Rebecca ; Ravasio, Cara ; Han, Xue
Brain stimulation, 2023, Vol.16 (1), p.242-242

Dynamic Control of Contractile Force in Engineered Heart Tissue
Li, Huate ; Sundaram, Subramanian ; Hu, Ruifeng ; Lou, Lihua ; Sanchez, Francisco ; McDonald, William ; Agarwal, Arvind ; Chen, Christopher S ; Bifano, Thomas G
IEEE transactions on biomedical engineering,, Vol.PP, p.1-12, 2023

Earlier proteoglycan turnover promotes higher efficiency matrix remodeling in MRL/MpJ tendons
Aggouras, Anthony N ; Connizzo, Brianne K
Journal of orthopaedic research, 2023

Machine learning for the identification of respiratory viral attachment machinery from
sequences data

Walker, Kenji C ; Shwarts, Maïa ; Demidikin, Stepan ; Chakravarty, Arijit ; Joseph-McCarthy, Diane
PloS one, Vol.18 (3), p.e0281642-e0281642, 2023

Measuring capillary flow dynamics using interlaced two-photon volumetric scanning
JT Giblin, SW Park, J Jiang, K Kılıç, S Kura, J Tang, DA Boas, IA Chen
Journal of Cerebral Blood Flow & Metabolism 43 (4), 595-609, 2023

Neurovascular coupling is preserved in chronic stroke recovery after targeted photothrombosis
S Sunil, J Jiang, S Shah, S Kura, K Kilic, SE Erdener, C Ayata, A Devor, ...
NeuroImage: Clinical 38, 103377, 2023

pH-Responsive Nanofiber Buttresses as Local Drug Delivery Devices
Altinbasak, Ismail ; Kocak, Salli ; Colby, Aaron H ; Alp, Yasin ; Sanyal, Rana ; Grinstaff, Mark W ; Sanyal, Amitav
Biomaterials science, 2023, Vol.11 (3), p.813-821, 2023

Radiolabeled biodistribution of expansile nanoparticles: Intraperitoneal administration results in tumor specific accumulation
AH Colby, J Kirsch, AN Patwa, R Liu, B Hollister, W McCulloch, ...
ACS nano 17 (3), 2212-2221

Stimulated Raman scattering spectro-microscopy using multiple-plate continuum
GJ Huang, PC Lai, MW Shen, JX Su, JY Guo, KC Chao, P Lin, JX Cheng, ...
Label-free Biomedical Imaging and Sensing (LBIS) 12391, 142-145, 2023

Simultaneous photoplethysmography and blood flow measurements towards the estimation of blood pressure using speckle contrast optical spectroscopy
A Garrett, B Kim, EJ Sie, NZ Gurel, F Marsili, DA Boas, D Roblyer
Biomedical Optics Express 14 (4), 1594-1607, 2023

Structural Insights into the Substrate Range of a Bacterial Monoamine Oxidase
SN Muellers, MA Tararina, U Kuzmanovic, JE Galagan, KN Allen
Biochemistry 62, 3, 851–862, 2023

Tantalum Oxide Nanoparticles For Contrast-Enhanced Computed Tomography Diagnosis Of Osteoarthritis
J Jäntti, A Joenathan, JT Honkanen, BD Snyder, J Töyräs, MW Grinstaff, ...
Osteoarthritis and Cartilage 31, S257, 2023

Triple Contrast Computed Tomography Reveals Site-Specific Differences In Human Knee Joint Biomechanical Properties
H Orava, P Paakkari, J Jäntti, MK Honkanen, JT Honkanen, T Virén, ...
Osteoarthritis and Cartilage 31, S257-S258, 2023

Vaccines Alone Cannot Slow the Evolution of SARS-CoV-2
Van Egeren, Debra ; Stoddard, Madison ; White, Laura F ; Hochberg, Natasha S ; Rogers, Michael S ; Zetter, Bruce ; Joseph-McCarthy, Diane ; Chakravarty, Arijit
Vaccines (Basel), Vol.11 (4), p.853, 2023